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Merge remote-tracking branch 'remotes/origin/master'

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Heng Li
2024-11-16 16:36:07 -05:00
parent 46750de966 7d8bbb74a8
commit 1d346d56bc
4 changed files with 21 additions and 9 deletions
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misc/README.md
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@@ -16,7 +16,8 @@ minimap2 -c test/MT-human.fa test/MT-orang.fa \
| paftools.js liftover -l10000 - <(echo -e "MT_orang\t2000\t5000") # liftOver
# no test data for the following examples
paftools.js junceval -e anno.gtf splice.sam > out.txt # compare splice junctions to annotations
paftools.js splice2bed anno.gtf > anno.bed # convert GTF/GFF3 to BED12
paftools.js splice2bed splice.sam > splice.bed # convert PAF/SAM to BED12
paftools.js gff2bed anno.gtf > anno.bed # convert GTF/GFF3 to BED12
```
## Table of Contents