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disabled dynamic banding; buggy

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Heng Li
2017-06-25 22:43:15 -04:00
parent b1077ff14c
commit 24d7f7f8b1
2 changed files with 2 additions and 2 deletions
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align.c
+1 -1
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@@ -184,7 +184,7 @@ static void mm_align1(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int
if (i == r->cnt - 1 || qe - qs >= opt->min_ksw_len || re - rs >= opt->min_ksw_len) {
qseq = &qseq0[rev][qs];
mm_idx_getseq(mi, rid, rs, re, tseq);
ksw_extz2_sse(km, qe - qs, qseq, re - rs, tseq, 5, mat, opt->q, opt->e, bw, opt->zdrop, KSW_EZ_DYN_BAND, ez);
ksw_extz2_sse(km, qe - qs, qseq, re - rs, tseq, 5, mat, opt->q, opt->e, bw, opt->zdrop, 0, ez);
mm_append_cigar(r, ez->n_cigar, ez->cigar);
mm_update_extra(r->p, qseq, tseq, ez->n_cigar, ez->cigar, 0);
if (ez->score == KSW_NEG_INF) { // truncated by Z-drop