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dev-r1076: log gap penalty

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Heng Li
2021-07-17 18:23:59 -04:00
parent 52fafe0fed
commit 2546999639
5 changed files with 27 additions and 20 deletions
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minimap.h
+2 -1
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@@ -36,9 +36,10 @@
#define MM_F_NO_END_FLT 0x10000000
#define MM_F_HARD_MLEVEL 0x20000000
#define MM_F_SAM_HIT_ONLY 0x40000000
#define MM_F_RMQ 0x80000000LL
#define MM_F_RMQ (0x80000000LL)
#define MM_F_QSTRAND (0x100000000LL)
#define MM_F_NO_INV (0x200000000LL)
#define MM_F_NO_LOG_GAP (0x400000000LL)
#define MM_I_HPC 0x1
#define MM_I_NO_SEQ 0x2