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r297: bidirectional RNA alignment

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Heng Li
2017-08-17 06:02:44 -04:00
parent b5f5929bf9
commit 2cde8d257c
6 changed files with 54 additions and 11 deletions
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map.c
+2
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@@ -38,6 +38,8 @@ void mm_mapopt_init(mm_mapopt_t *opt)
void mm_mapopt_update(mm_mapopt_t *opt, const mm_idx_t *mi)
{
if (opt->flag & MM_F_SPLICE_BOTH)
opt->flag &= ~(MM_F_SPLICE_FOR|MM_F_SPLICE_REV);
opt->max_occ = mm_idx_cal_max_occ(mi, opt->max_occ_frac);
opt->mid_occ = mm_idx_cal_max_occ(mi, opt->mid_occ_frac);
if (mm_verbose >= 3)