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r297: bidirectional RNA alignment

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Heng Li
2017-08-17 06:02:44 -04:00
parent b5f5929bf9
commit 2cde8d257c
6 changed files with 54 additions and 11 deletions
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mmpriv.h
+2 -1
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@@ -62,7 +62,8 @@ void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc);
static inline int32_t mm_min_intron_len(int32_t q, int32_t e, int32_t q_intron)
{
return q_intron > q? (int)((float)(q_intron - q) / e + .999) : INT32_MAX;
int32_t x = q_intron > q? (int)((float)(q_intron - q) / e + .999) : INT32_MAX;
return x > 4? x : 4;
}
#endif