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an alternative strategy to fix for HPC

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it makes the result better, but still not quite right.
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Heng Li
2017-06-24 09:26:24 -04:00
parent 6088dc11ff
commit 2d8fda9586
2 changed files with 31 additions and 4 deletions
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map.c
+1 -1
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@@ -25,7 +25,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->a = 1, opt->b = 1, opt->q = 1, opt->e = 1;
opt->zdrop = 100;
opt->min_ksw_len = 100;
opt->min_ksw_len = 1000;
}
void mm_mapopt_update(mm_mapopt_t *opt, const mm_idx_t *mi)