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r573: prepare to generalize index

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Heng Li
2017-11-11 19:54:06 -05:00
parent 3b518271ee
commit 2f463b1db0
6 changed files with 38 additions and 35 deletions
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4
python/cmappy.pxd
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@@ -5,7 +5,7 @@ cdef extern from "minimap.h":
# Options
#
ctypedef struct mm_idxopt_t:
short k, w, is_hpc, bucket_bits
short k, w, flag, bucket_bits
int mini_batch_size
uint64_t batch_size
@@ -51,7 +51,7 @@ cdef extern from "minimap.h":
pass
ctypedef struct mm_idx_t:
int32_t b, w, k, is_hpc
int32_t b, w, k, flag
uint32_t n_seq
mm_idx_seq_t *seq
uint32_t *S