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Released minimap2-2.3 (r531)

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This commit is contained in:
Heng Li
2017-10-22 23:13:35 -04:00
parent 1dd221ad82
commit 306e4541f8
7 changed files with 106 additions and 28 deletions
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map.c
+6
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@@ -52,6 +52,12 @@ void mm_mapopt_update(mm_mapopt_t *opt, const mm_idx_t *mi)
fprintf(stderr, "[M::%s::%.3f*%.2f] mid_occ = %d\n", __func__, realtime() - mm_realtime0, cputime() / (realtime() - mm_realtime0), opt->mid_occ);
}
void mm_mapopt_max_intron_len(mm_mapopt_t *opt, int max_intron_len)
{
if ((opt->flag & MM_F_SPLICE) && max_intron_len > 0)
opt->max_gap_ref = opt->bw = max_intron_len;
}
int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
{
if (preset == 0) {