fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-08 02:58:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r655: options to map to one strand of the ref #91

Browse Source
This commit is contained in:
Heng Li
2018-01-16 10:34:30 -05:00
parent eecc06086f
commit 33f8157961
5 changed files with 29 additions and 3 deletions
Download Patch File Download Diff File Expand all files Collapse all files
minimap2.1
+9 -1
View File
@@ -1,4 +1,4 @@
.TH minimap2 1 "9 January 2018" "minimap2-2.7 (r654)" "Bioinformatics tools"
.TH minimap2 1 "16 January 2018" "minimap2-2.7-dirty (r655)" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -206,6 +206,14 @@ seeds with ungapped alignment.
.TP
.BR --frag [= no | yes ]
Whether to enable the fragment mode [no]
.TP
.B --for-only
Only map to the forward strand of the reference sequences. For paired-end
reads in the forward-reverse orientation, the first read is mapped to forward
strand of the reference and the second read to the reverse stand.
.TP
.B --rev-only
Only map to the reverse complement strand of the reference sequences.
.SS Alignment options
.TP 10
.BI -A \ INT