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r1051: added two internal parameters

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rmq_rescue_size and rmq_rescue_ratio
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Heng Li
2021-05-24 16:38:45 -04:00
parent 9626b3e716
commit 34a41197d7
5 changed files with 9 additions and 3 deletions
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python/cmappy.pxd
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@@ -24,6 +24,8 @@ cdef extern from "minimap.h":
int min_chain_score
float chain_gap_scale
int rmq_size_cap, rmq_inner_dist
int rmq_rescue_size
float rmq_rescue_ratio
float mask_level
int mask_len