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Default compilation without AVX2

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Saurabh
2021-07-20 12:32:34 -04:00
committed by Heng Li
parent f68b4b22df
commit 34e273c8ee
6 changed files with 70 additions and 42 deletions
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chain.c
+10 -5
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@@ -33,7 +33,11 @@ Modified Copyright (C) 2021 Intel Corporation
#include "minimap.h"
#include "mmpriv.h"
#include "kalloc.h"
#if defined(VECTORIZED_CHAINING) && defined(__AVX512BW__)
#include "parallel_chaining_32_bit.h"
#endif
static const char LogTable256[256] = {
#define LT(n) n, n, n, n, n, n, n, n, n, n, n, n, n, n, n, n
-1, 0, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3,
@@ -53,9 +57,8 @@ mm128_t *mm_chain_dp(int max_dist_x, int max_dist_y, int bw, int max_skip, int m
{ // TODO: make sure this works when n has more than 32 bits
int32_t k, *p, *t, *v, n_u, n_v;
uint32_t *f;
int64_t i, j, st = 0;
uint64_t *u, *u2, sum_qspan = 0;
float avg_qspan;
int64_t i, j;
uint64_t *u, *u2;
mm128_t *b, *w;
if (_u) *_u = 0, *n_u_ = 0;
@@ -68,7 +71,7 @@ mm128_t *mm_chain_dp(int max_dist_x, int max_dist_y, int bw, int max_skip, int m
t = (int32_t*)kmalloc(km, n * 4);
v = (int32_t*)kmalloc(km, n * 4);
memset(t, 0, n * 4);
#if VECTORIZED_CHAINING && (__AVX512BW__ || __AVX2__)
#if defined(VECTORIZED_CHAINING) && defined(__AVX512BW__)
/* Allocation for debugging
f_avx = (uint32_t*)kmalloc(km, n * 4);
p_avx = (int32_t*)kmalloc(km, n * 4);
@@ -94,7 +97,9 @@ mm128_t *mm_chain_dp(int max_dist_x, int max_dist_y, int bw, int max_skip, int m
free(anchor_l);
free(anchors);
#else
int64_t st = 0;
uint64_t sum_qspan = 0;
float avg_qspan;
for (i = 0; i < n; ++i) sum_qspan += a[i].y>>32&0xff;
avg_qspan = (float)sum_qspan / n;