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pairing in the split-idx mode

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Heng Li
2018-07-14 23:43:34 -04:00
parent e5277dbf5c
commit 3545e35a42
2 changed files with 39 additions and 23 deletions
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minimap.h
+1 -1
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@@ -321,7 +321,7 @@ void mm_tbuf_destroy(mm_tbuf_t *b);
*/
mm_reg1_t *mm_map(const mm_idx_t *mi, int l_seq, const char *seq, int *n_regs, mm_tbuf_t *b, const mm_mapopt_t *opt, const char *name);
int mm_map_frag(const mm_idx_t *mi, int n_segs, const int *qlens, const char **seqs, int *n_regs, mm_reg1_t **regs, mm_tbuf_t *b, const mm_mapopt_t *opt, const char *qname);
void mm_map_frag(const mm_idx_t *mi, int n_segs, const int *qlens, const char **seqs, int *n_regs, mm_reg1_t **regs, mm_tbuf_t *b, const mm_mapopt_t *opt, const char *qname);
/**
* Align a fasta/fastq file and print alignments to stdout