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Merge branch 'master' into splice-model

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Heng Li
2023-04-06 21:09:18 -04:00
parent 85a5260408 a6fab118c5
commit 35732f3025
14 changed files with 365 additions and 16 deletions
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ksw2_exts2_sse.c
+1 -1
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@@ -465,7 +465,7 @@ void ksw_exts2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uin
} else H[0] = v8[0] - qe, max_H = H[0], max_t = 0; // special casing r==0
// update ez
if (en0 == tlen - 1 && H[en0] > ez->mte)
ez->mte = H[en0], ez->mte_q = r - en;
ez->mte = H[en0], ez->mte_q = r - en0;
if (r - st0 == qlen - 1 && H[st0] > ez->mqe)
ez->mqe = H[st0], ez->mqe_t = st0;
if (ksw_apply_zdrop(ez, 1, max_H, r, max_t, zdrop, 0)) break;