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Heng Li
2017-06-23 22:42:15 -04:00
parent 523a8832ad
commit 35b84f88c6
3 changed files with 90 additions and 33 deletions
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minimap.h
+7 -3
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@@ -42,9 +42,13 @@ typedef struct {
} mm_idx_t;
typedef struct {
uint32_t n, m;
uint32_t capacity;
int32_t score;
uint32_t blen;
uint32_t n_diff, n_ambi;
uint32_t n_cigar;
uint32_t cigar[];
} mm_cigar_t;
} mm_extra_t;
typedef struct {
uint32_t cnt:31, rev:1;
@@ -53,7 +57,7 @@ typedef struct {
int32_t qs, qe, rs, re;
int32_t parent, subsc;
int32_t as;
mm_cigar_t *cigar;
mm_extra_t *p;
} mm_reg1_t;
typedef struct {