r161: filter bad seeds; changed default -g/-r

2026-09-29 18:48:11 +08:00 · 2017-07-08 13:31:27 -04:00
parent 1fee5f8edc
commit 38b2830e18
4 changed files with 24 additions and 4 deletions
@@ -17,8 +17,8 @@ void mm_mapopt_init(mm_mapopt_t *opt)

 	opt->min_cnt = 3;
 	opt->min_chain_score = 40;
-	opt->bw = 1000;
-	opt->max_gap = 10000;
+	opt->bw = 500;
+	opt->max_gap = 5000;
 	opt->max_chain_skip = 15;
 	opt->min_seedcov_ratio = 0.0f;