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separated formating printing

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for SAM in future; and for performance
This commit is contained in:
Heng Li
2017-06-25 16:13:54 -04:00
parent 7780ab792a
commit 39083be9ab
5 changed files with 94 additions and 26 deletions
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Makefile
+5 -4
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@@ -3,7 +3,7 @@ CFLAGS= -g -Wall -O2 -Wc++-compat -Wno-unused-function
CPPFLAGS=
INCLUDES= -I.
OBJS= kalloc.o kthread.o misc.o bseq.o sketch.o chain.o align.o sdust.o \
index.o map.o ksw2_extz2_sse.o
index.o format.o map.o ksw2_extz2_sse.o
PROG= minimap2
PROG_EXTRA= sdust
LIBS= -lm -lz -lpthread
@@ -34,14 +34,15 @@ depend:
# DO NOT DELETE
align.o: minimap.h ksw2.h
align.o: minimap.h mmpriv.h bseq.h ksw2.h
bseq.o: bseq.h kseq.h
chain.o: minimap.h mmpriv.h kalloc.h
chain.o: minimap.h mmpriv.h bseq.h kalloc.h
format.o: mmpriv.h minimap.h bseq.h
index.o: kthread.h bseq.h minimap.h mmpriv.h kvec.h kalloc.h khash.h
kalloc.o: kalloc.h
ksw2_extz2_sse.o: ksw2.h
main.o: bseq.h minimap.h mmpriv.h
map.o: kthread.h kvec.h kalloc.h sdust.h minimap.h mmpriv.h bseq.h
map.o: kthread.h kvec.h kalloc.h sdust.h mmpriv.h minimap.h bseq.h
misc.o: minimap.h ksort.h
sdust.o: kalloc.h kdq.h kvec.h sdust.h
sketch.o: kvec.h kalloc.h minimap.h