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r1108: fixed missing inversions for #816 and #806

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Heng Li
2021-10-04 16:34:30 -04:00
parent aefa2c0d86
commit 39bdd45875
5 changed files with 27 additions and 8 deletions
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minimap.h
+1 -1
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@@ -108,7 +108,7 @@ typedef struct {
int32_t mlen, blen; // seeded exact match length; seeded alignment block length
int32_t n_sub; // number of suboptimal mappings
int32_t score0; // initial chaining score (before chain merging/spliting)
uint32_t mapq:8, split:2, rev:1, inv:1, sam_pri:1, proper_frag:1, pe_thru:1, seg_split:1, seg_id:8, split_inv:1, is_alt:1, dummy:6;
uint32_t mapq:8, split:2, rev:1, inv:1, sam_pri:1, proper_frag:1, pe_thru:1, seg_split:1, seg_id:8, split_inv:1, is_alt:1, strand_retained:1, dummy:5;
uint32_t hash;
float div;
mm_extra_t *p;