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r360: allow to set integer max occ

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Heng Li
2017-09-13 11:37:00 -04:00
parent 1b44275802
commit 3c91d652dd
5 changed files with 16 additions and 10 deletions
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index.c
+2 -2
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@@ -104,13 +104,13 @@ int mm_idx_getseq(const mm_idx_t *mi, uint32_t rid, uint32_t st, uint32_t en, ui
return en - st;
}
uint32_t mm_idx_cal_max_occ(const mm_idx_t *mi, float f)
int32_t mm_idx_cal_max_occ(const mm_idx_t *mi, float f)
{
int i;
size_t n = 0;
uint32_t thres;
khint_t *a, k;
if (f <= 0.) return UINT32_MAX;
if (f <= 0.) return INT32_MAX;
for (i = 0; i < 1<<mi->b; ++i)
if (mi->B[i].h) n += kh_size((idxhash_t*)mi->B[i].h);
a = (uint32_t*)malloc(n * 4);