mirror of
https://github.com/lh3/minimap2.git
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r129: fixed memory leak caused by qualities
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+17
-2
@@ -5,7 +5,7 @@
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minimap2 - mapping and alignment between collections of DNA sequences
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.SH SYNOPSIS
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* Index the target sequences (optional):
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* Indexing the target sequences (optional):
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.RS 4
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minimap2
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.RB [ -H ]
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@@ -13,12 +13,14 @@ minimap2
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.IR kmer ]
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.RB [ -w
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.IR miniWinSize ]
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.RB [ -I
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.IR batchSize ]
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.B -d
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.I target.mmi
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.I target.fa
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.RE
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* Align with CIGAR:
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* Long-read alignment with CIGAR:
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.RS 4
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minimap2
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.B -b
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@@ -43,6 +45,19 @@ minimap2
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.I output.paf
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.RE
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* Long read overlap without CIGAR:
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.RS 4
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minimap2
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.B -x
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.R ava10k
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.RB [ -t
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.IR nThreads ]
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.I target.fa
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.I query.fa
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>
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.I output.paf
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.RE
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.SH DESCRIPTION
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.PP
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Minimap2 is a fast sequence mapping and alignment program that can find
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