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r87: fixed a bug in ksw2

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Heng Li
2017-06-27 13:29:48 -04:00
parent 734028f92b
commit 42283ef10c
4 changed files with 15 additions and 9 deletions
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ksw2.h
+1 -1
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@@ -8,7 +8,7 @@
#define KSW_EZ_SCORE_ONLY 0x01 // don't record alignment path/cigar
#define KSW_EZ_RIGHT 0x02 // right-align gaps
#define KSW_EZ_GENERIC_SC 0x04 // without this flag: match/mismatch only; last symbol is a wildcard
#define KSW_EZ_GLOBAL_ONLY 0x08 // don't record best score and ignore z-drop; significantly faster
#define KSW_EZ_APPROX_MAX 0x08 // approximate max and Z-drop; this is faster
#define KSW_EZ_DYN_BAND 0x10 // once used, ksw_extz_t::{mqe,mte} may be wrong
#define KSW_EZ_EXTZ_ONLY 0x20 // only perform extension
#define KSW_EZ_REV_CIGAR 0x40 // reverse CIGAR in the output