r126: filter by fraction of seed coverage

otherwise we may get too many poor overlap mappings.
This commit is contained in:
Heng Li
2017-06-30 22:15:45 -04:00
parent d73bb28097
commit 426c2975f6
6 changed files with 41 additions and 23 deletions
+1
View File
@@ -75,6 +75,7 @@ typedef struct {
int max_chain_skip;
int min_cnt;
int min_chain_score;
float min_seedcov_ratio;
float pri_ratio;
float mask_level;