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r126: filter by fraction of seed coverage

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otherwise we may get too many poor overlap mappings.
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Heng Li
2017-06-30 22:15:45 -04:00
parent d73bb28097
commit 426c2975f6
6 changed files with 41 additions and 23 deletions
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mmpriv.h
+1
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@@ -42,6 +42,7 @@ void mm_sync_regs(void *km, int n_regs, mm_reg1_t *regs);
void mm_set_parent(void *km, float mask_level, int n, mm_reg1_t *r);
void mm_update_parent(void *km, float mask_level, int n, mm_reg1_t *r);
void mm_select_sub(void *km, float mask_level, float pri_ratio, int *n_, mm_reg1_t *r);
void mm_filter_regs(void *km, const mm_mapopt_t *opt, int *n_regs, mm_reg1_t *regs);
void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int n_regs, mm_reg1_t *regs, mm128_t *a);
void mm_set_mapq(int n_regs, mm_reg1_t *regs);