backup: preliminary boundary alignment

2026-10-07 09:58:12 +08:00 · 2017-08-12 23:10:14 -04:00
parent bcfe00d2ad
commit 43506edbc5
5 changed files with 70 additions and 38 deletions
@@ -94,6 +94,7 @@ typedef struct {
 	int min_join_flank_sc;

 	int a, b, q, e, q2, e2; // matching score, mismatch, gap-open and gap-ext penalties
+	int noncan;
 	int zdrop;
 	int min_dp_max;
 	int min_ksw_len;