first python version

setup.py

@@ -0,0 +1,21 @@
+from setuptools import setup, Extension
+from Cython.Build import cythonize
+import sys
+
+sys.path.append('python')
+
+setup(
+	name = 'minimap2',
+	version = '2.1.1',
+	url = 'https://github.com/lh3/minimap2',
+	description = 'Minimap2 python binding',
+	author = 'Heng Li',
+	author_email = 'lh3@me.com',
+	keywords = ['bioinformatics', 'sequence-alignment'],
+    ext_modules = cythonize([Extension('minimap2',
+		['python/minimap2.pyx', 'align.c', 'bseq.c', 'chain.c', 'format.c', 'hit.c', 'index.c', 'kalloc.c',
+		 'ksw2_extd2_sse.c', 'ksw2_exts2_sse.c', 'ksw2_extz2_sse.c', 'ksw2_ll_sse.c', 'kthread.c', 'map.c',
+		 'misc.c', 'sdust.c', 'sketch.c'],
+		extra_compile_args = ['-msse4'],
+		include_dirs = ['.'])])
+)