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avx2 support for chaining and alignment

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Saurabh
2021-06-29 19:18:22 -04:00
committed by Heng Li
parent a9ac74ffe1
commit 448341c96c
4 changed files with 679 additions and 5 deletions
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align.c
+2 -2
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@@ -367,8 +367,8 @@ static void mm_align_pair(void *km, const mm_mapopt_t *opt, int qlen, const uint
#ifdef ALIGN_AVX
#ifdef __AVX512BW__
ksw_extd2_avx512(km, qlen, qseq, tlen, tseq, 5, mat, opt->q, opt->e, opt->q2, opt->e2, w, zdrop, end_bonus, flag, ez);
#else
ksw_extd2_sse(km, qlen, qseq, tlen, tseq, 5, mat, opt->q, opt->e, opt->q2, opt->e2, w, zdrop, end_bonus, flag, ez);
#elif __AVX2__
ksw_extd2_avx2(km, qlen, qseq, tlen, tseq, 5, mat, opt->q, opt->e, opt->q2, opt->e2, w, zdrop, end_bonus, flag, ez);
#endif
#else
ksw_extd2_sse(km, qlen, qseq, tlen, tseq, 5, mat, opt->q, opt->e, opt->q2, opt->e2, w, zdrop, end_bonus, flag, ez);