start to work on alignment

2026-10-03 06:48:12 +08:00 · 2017-06-23 13:44:45 -04:00
parent c6d5dea314
commit 44cdd18de0
6 changed files with 65 additions and 10 deletions
@@ -16,6 +16,8 @@ uint32_t ks_ksmall_uint32_t(size_t n, uint32_t arr[], size_t kk);

 int mm_chain_dp(int max_dist, int bw, int max_skip, int min_sc, int n, mm128_t *a, uint64_t **_u, void *km);

+void mm_align_skeleton(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int qlen, const char *qstr, int n_regs, mm_reg1_t *regs, mm128_t *a);
+
 #ifdef __cplusplus
 }
 #endif