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r934: --junc-bed to read BED12

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Heng Li
2019-04-28 20:12:28 -04:00
parent f64e426a5a
commit 49c6d83a8e
4 changed files with 45 additions and 19 deletions
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main.c
+2 -2
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@@ -6,7 +6,7 @@
#include "mmpriv.h"
#include "ketopt.h"
#define MM_VERSION "2.16-r933-dirty"
#define MM_VERSION "2.16-r934-dirty"
#ifdef __linux__
#include <sys/resource.h>
@@ -366,7 +366,7 @@ int main(int argc, char *argv[])
__func__, realtime() - mm_realtime0, cputime() / (realtime() - mm_realtime0), mi->n_seq);
if (argc != o.ind + 1) mm_mapopt_update(&opt, mi);
if (mm_verbose >= 3) mm_idx_stat(mi);
if (junc_bed) mm_idx_bed_read(mi, junc_bed);
if (junc_bed) mm_idx_bed_read(mi, junc_bed, 1);
if (!(opt.flag & MM_F_FRAG_MODE)) {
for (i = o.ind + 1; i < argc; ++i)
mm_map_file(mi, argv[i], &opt, n_threads);