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r934: --junc-bed to read BED12

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Heng Li
2019-04-28 20:12:28 -04:00
parent f64e426a5a
commit 49c6d83a8e
4 changed files with 45 additions and 19 deletions
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minimap.h
+1 -1
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@@ -367,7 +367,7 @@ int mm_idx_index_name(mm_idx_t *mi);
int mm_idx_name2id(const mm_idx_t *mi, const char *name);
int mm_idx_getseq(const mm_idx_t *mi, uint32_t rid, uint32_t st, uint32_t en, uint8_t *seq);
int mm_idx_bed_read(mm_idx_t *mi, const char *fn);
int mm_idx_bed_read(mm_idx_t *mi, const char *fn, int read_junc);
int mm_idx_bed_junc(const mm_idx_t *mi, int32_t ctg, int32_t st, int32_t en, uint8_t *s);
// deprecated APIs for backward compatibility