min_ksw_len

2026-10-05 00:38:11 +08:00 · 2017-06-23 14:38:28 -04:00
parent 9cd313eae1
commit 4ae0b46972
3 changed files with 24 additions and 16 deletions
@@ -61,9 +61,11 @@ typedef struct {
 	int min_score;
 	float pri_ratio;
 	float mask_level;
+	int a, b, q, e; // matching score, mismatch, gap-open and gap-ext penalties

 	int max_occ;
 	int mid_occ;
+	int min_ksw_len;
 } mm_mapopt_t;

 extern int mm_verbose;