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working with toy examples

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This commit is contained in:
Heng Li
2018-07-15 10:55:00 -04:00
parent 951c0d1d35
commit 4b707aac92
5 changed files with 49 additions and 34 deletions
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align.c
+2 -2
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@@ -199,7 +199,7 @@ static void mm_append_cigar(mm_reg1_t *r, uint32_t n_cigar, uint32_t *cigar) //
mm_extra_t *p;
if (n_cigar == 0) return;
if (r->p == 0) {
uint32_t capacity = n_cigar + sizeof(mm_extra_t)/4; // TODO: should this be "n_cigar + sizeof(mm_extra_t)/4" instead?
uint32_t capacity = n_cigar + sizeof(mm_extra_t)/4;
kroundup32(capacity);
r->p = (mm_extra_t*)calloc(capacity, 4);
r->p->capacity = capacity;
@@ -878,6 +878,6 @@ mm_reg1_t *mm_align_skeleton(void *km, const mm_mapopt_t *opt, const mm_idx_t *m
kfree(km, qseq0[0]);
kfree(km, ez.cigar);
mm_filter_regs(opt, qlen, n_regs_, regs);
mm_hit_sort_by_dp(km, n_regs_, regs);
mm_hit_sort(km, n_regs_, regs);
return regs;
}