diff --git a/misc/paftools.js b/misc/paftools.js index 578ddea..d148849 100755 --- a/misc/paftools.js +++ b/misc/paftools.js @@ -3750,6 +3750,7 @@ function main(args) print(" pafcmp compare two PAF files"); print(" mason2fq convert mason2-simulated SAM to FASTQ"); print(" pbsim2fq convert PBSIM-simulated MAF to FASTQ"); + print(" badread2fa convert Baderead FASTQ to FASTA"); print(" junceval evaluate splice junction consistency with known annotations"); print(" exoneval evaluate exon-level consistency with known annotations"); print(" ov-eval evaluate read overlap sensitivity using read-to-ref mapping");