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updated README

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Saurabh
2021-08-04 16:01:33 -04:00
committed by Heng Li
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@@ -7,7 +7,7 @@ In the current version, all the modules are optimized using **AVX-512** vectoriz
### System requirement ### System requirement
Operating System: Linux Operating System: Linux
mm2-fast was tested using g++ (GCC) 9.2.0 and icpc version 19.1.3.304 mm2-fast was tested using g++ (GCC) 9.2.0 and icpc version 19.1.3.304
Architecture: [AVX512](https://en.wikipedia.org/wiki/AVX-512) Architecture: x86\_64 CPUs with [AVX512](https://en.wikipedia.org/wiki/AVX-512)
Memory requirement: ~30GB for human genome Memory requirement: ~30GB for human genome
### Installation ### Installation
@@ -21,7 +21,7 @@ make
### Usage ### Usage
The usage of mm2-fast is same as minimap2. Here is an example of mapping ONT reads with test data. The usage of mm2-fast is same as minimap2. Here is an example of mapping ONT reads with test data.
```sh ```sh
./minimap2 -ax map-ont test/MT-human.fa test/MT-orang.fa > mm2-fast_output ./mm2-fast -ax map-ont test/MT-human.fa test/MT-orang.fa > mm2-fast_output
``` ```
### Accuracy evaluation ### Accuracy evaluation