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r164: unmapped read not properly flagged

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Heng Li
2017-07-08 18:16:18 -04:00
parent 42846ce65d
commit 4ee3202539
2 changed files with 2 additions and 2 deletions
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format.c
+1 -1
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@@ -111,7 +111,7 @@ void mm_write_sam(kstring_t *s, const mm_idx_t *mi, const bseq1_t *t, const mm_r
int flag = 0;
s->l = 0;
if (r == 0) {
mm_sprintf_lite(s, "%s\t0\t*\t0\t0\t*\t*\t0\t0\t", t->name);
mm_sprintf_lite(s, "%s\t4\t*\t0\t0\t*\t*\t0\t0\t", t->name);
sam_write_sq(s, t->seq, t->l_seq, 0, 0);
mm_sprintf_lite(s, "\t");
if (t->qual) sam_write_sq(s, t->qual, t->l_seq, 0, 0);