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revamped README; not finished yet

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Heng Li
2017-10-06 13:02:25 -04:00
parent c6384ed2c8
commit 4f6244bd4a
2 changed files with 115 additions and 30 deletions
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index.c
+1 -1
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@@ -478,7 +478,7 @@ mm_idx_t *mm_idx_reader_read(mm_idx_reader_t *r, int n_threads)
if (r->is_idx) {
mi = mm_idx_load(r->fp.idx);
if (mi && mm_verbose >= 2 && (mi->k != r->opt.k || mi->w != r->opt.w || mi->is_hpc != r->opt.is_hpc))
fprintf(stderr, "[WARNING] Indexing parameters (-k, -w or -H) overridden by parameters used in the prebuilt index.\n");
fprintf(stderr, "[WARNING]\033[1;31m Indexing parameters (-k, -w or -H) overridden by parameters used in the prebuilt index.\033[0m\n");
} else
mi = mm_idx_gen(r->fp.seq, r->opt.w, r->opt.k, r->opt.bucket_bits, r->opt.is_hpc, r->opt.mini_batch_size, n_threads, r->opt.batch_size, 1);
if (mi) {