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r1059: with --rmq, use the larger bandwidth
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@@ -7,7 +7,7 @@
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#include "mmpriv.h"
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#include "mmpriv.h"
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#include "ketopt.h"
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#include "ketopt.h"
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#define MM_VERSION "2.19-r1057"
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#define MM_VERSION "2.19-r1059-dirty"
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#ifdef __linux__
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#ifdef __linux__
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#include <sys/resource.h>
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#include <sys/resource.h>
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@@ -296,6 +296,8 @@ int main(int argc, char *argv[])
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}
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}
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if (!fnw && !(opt.flag&MM_F_CIGAR))
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if (!fnw && !(opt.flag&MM_F_CIGAR))
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ipt.flag |= MM_I_NO_SEQ;
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ipt.flag |= MM_I_NO_SEQ;
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if (opt.bw < opt.bw_long && (opt.flag&MM_F_RMQ))
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opt.bw = opt.bw_long;
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if (mm_check_opt(&ipt, &opt) < 0)
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if (mm_check_opt(&ipt, &opt) < 0)
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return 1;
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return 1;
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if (opt.best_n == 0) {
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if (opt.best_n == 0) {
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