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Heng Li
2017-06-23 18:57:00 -04:00
parent 6c8368c24c
commit 4fea3d778a
5 changed files with 60 additions and 11 deletions
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ksw2_extz2_sse.c
+5 -2
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@@ -272,8 +272,11 @@ void ksw_extz2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uin
kfree(km, mem);
if (with_max) kfree(km, H);
if (with_cigar) { // backtrack
if (ez->score > KSW_NEG_INF) ksw_backtrack(km, 1, (uint8_t*)p, off, n_col_*16, tlen-1, qlen-1, &ez->m_cigar, &ez->n_cigar, &ez->cigar);
else ksw_backtrack(km, 1, (uint8_t*)p, off, n_col_*16, ez->max_t, ez->max_q, &ez->m_cigar, &ez->n_cigar, &ez->cigar);
int rev_cigar = !!(flag & KSW_EZ_REV_CIGAR);
if (ez->score > KSW_NEG_INF && !(flag&KSW_EZ_EXTZ_ONLY))
ksw_backtrack(km, 1, rev_cigar, (uint8_t*)p, off, n_col_*16, tlen-1, qlen-1, &ez->m_cigar, &ez->n_cigar, &ez->cigar);
else if (ez->max_t >= 0 && ez->max_q >= 0)
ksw_backtrack(km, 1, rev_cigar, (uint8_t*)p, off, n_col_*16, ez->max_t, ez->max_q, &ez->m_cigar, &ez->n_cigar, &ez->cigar);
kfree(km, mem2); kfree(km, off);
}
}