r145: changed default -p from 2 to 0.8

For long reads, secondary alignments can be very information.
This commit is contained in:
Heng Li
2017-07-02 22:51:45 -04:00
parent 632b8638d2
commit 51cfb60520
3 changed files with 10 additions and 5 deletions
+1 -1
View File
@@ -23,7 +23,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->min_seedcov_ratio = 0.0f;
opt->mask_level = 0.5f;
opt->pri_ratio = 2.0f;
opt->pri_ratio = 0.8f;
opt->best_n = 5;
opt->max_join_long = 20000;