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r290: in techrep, explain spliced alignment

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Heng Li
2017-08-12 15:40:49 -04:00
parent a23df2dc91
commit 53b3265d84
3 changed files with 42 additions and 17 deletions
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main.c
+2 -2
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@@ -8,7 +8,7 @@
#include "minimap.h"
#include "mmpriv.h"
#define MM_VERSION "2.0-r289-dirty"
#define MM_VERSION "2.0-r290-dirty"
void liftrlimit()
{
@@ -197,7 +197,7 @@ int main(int argc, char *argv[])
fprintf(stderr, " asm10: -k19 -w19 -A1 -B9 -O16,41 -E2,1 -s200 -z200 (asm to ref mapping; break at 10%% div.)\n");
fprintf(stderr, " ava-pb: -Hk19 -w5 -Xp0 -m100 -g10000 -K500m --max-chain-skip 25 (PacBio read overlap)\n");
fprintf(stderr, " ava-ont: -k15 -w5 -Xp0 -m100 -g10000 -K500m --max-chain-skip 25 (ONT read overlap)\n");
fprintf(stderr, " splice: -k15 -w5 --splice -g2000 -G100k -A1 -B2 -O2,32 -E1,0 -z200 (long-read spliced aln)\n");
fprintf(stderr, " splice: -k15 -w5 --splice -g2000 -G200k -A1 -B2 -O2,32 -E1,0 -z200 (long-read spliced aln)\n");
fprintf(stderr, "\nSee `man ./minimap2.1' for detailed description of command-line options.\n");
return 1;
}