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r149: introduced debugging flags on CLI

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This commit is contained in:
Heng Li
2017-07-03 11:02:32 -04:00
parent 2e4fd9f1d0
commit 53c4bf5e4f
5 changed files with 15 additions and 6 deletions
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main.c
+7 -3
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@@ -10,7 +10,7 @@
#include "minimap.h"
#include "mmpriv.h"
#define MM_VERSION "2.0-r148-pre"
#define MM_VERSION "2.0-r149-pre"
void liftrlimit()
{
@@ -45,6 +45,8 @@ static struct option long_options[] = {
{ "bucket-bits", required_argument, 0, 0 },
{ "mb-size", required_argument, 0, 0 },
{ "int-rname", no_argument, 0, 0 },
{ "no-kalloc", no_argument, 0, 0 },
{ "print-qname", no_argument, 0, 0 },
{ "version", no_argument, 0, 'V' },
{ "min-count", required_argument, 0, 'n' },
{ "min-chain-score",required_argument, 0, 'm' },
@@ -94,8 +96,10 @@ int main(int argc, char *argv[])
else if (c == 'E') opt.e = atoi(optarg);
else if (c == 'z') opt.zdrop = atoi(optarg);
else if (c == 's') opt.min_dp_max = atoi(optarg);
else if (c == 0 && long_idx == 0) bucket_bits = atoi(optarg); // bucket-bits
else if (c == 0 && long_idx == 2) keep_name = 0; // int-rname
else if (c == 0 && long_idx == 0) bucket_bits = atoi(optarg); // --bucket-bits
else if (c == 0 && long_idx == 2) keep_name = 0; // --int-rname
else if (c == 0 && long_idx == 3) mm_dbg_flag |= MM_DBG_NO_KALLOC; // --no-kalloc
else if (c == 0 && long_idx == 4) mm_dbg_flag |= MM_DBG_PRINT_QNAME; // --print-qname
else if (c == 'V') {
puts(MM_VERSION);
return 0;