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r1234: added splice:sr for SE RNA-seq

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Heng Li
2025-03-30 15:54:12 -04:00
parent 2857de7dbd
commit 54f8e5f7d6
4 changed files with 10 additions and 3 deletions
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main.c
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@@ -373,6 +373,7 @@ int main(int argc, char *argv[])
fprintf(fp_help, " --MD output the MD tag\n");
fprintf(fp_help, " --eqx write =/X CIGAR operators\n");
fprintf(fp_help, " -Y use soft clipping for supplementary alignments\n");
fprintf(fp_help, " -y copy FASTA/Q comments to output SAM\n");
fprintf(fp_help, " -t INT number of threads [%d]\n", n_threads);
fprintf(fp_help, " -K NUM minibatch size for mapping [500M]\n");
// fprintf(fp_help, " -v INT verbose level [%d]\n", mm_verbose);