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r921: output unmapped reads in full PAF

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Heng Li
2019-02-27 15:03:19 -05:00
parent 90b7b83ec7
commit 55e39c2d30
4 changed files with 16 additions and 12 deletions
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format.c
+1 -1
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@@ -305,7 +305,7 @@ void mm_write_paf3(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, const
{
s->l = 0;
if (r == 0) {
mm_sprintf_lite(s, "%s\t%d", t->name, t->l_seq);
mm_sprintf_lite(s, "%s\t%d\t0\t0\t*\t*\t0\t0\t0\t0\t0\t0", t->name, t->l_seq);
if (rep_len >= 0) mm_sprintf_lite(s, "\trl:i:%d", rep_len);
return;
}