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exposed timer and verbose-level to mappy

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Heng Li
2017-09-17 15:21:36 -04:00
parent c8a019fae8
commit 5715c423ff
3 changed files with 23 additions and 1 deletions
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4
python/cmappy.pxd
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@@ -32,6 +32,7 @@ cdef extern from "minimap.h":
int mini_batch_size
int mm_set_opt(char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
int mm_verbose
#
# Indexing
@@ -106,3 +107,6 @@ cdef extern from "cmappy.h":
kseq_t *mm_fastx_open(const char *fn)
void mm_fastx_close(kseq_t *ks)
int kseq_read(kseq_t *seq)
int mm_verbose_level(int v)
void mm_reset_timer()