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compiled, but not working

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This commit is contained in:
Heng Li
2019-01-01 01:32:43 -05:00
parent a4782c7d7a
commit 58f4210dea
3 changed files with 329 additions and 12 deletions
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ksw2_dispatch.c
+19 -10
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@@ -2,15 +2,16 @@
#include <stdlib.h>
#include "ksw2.h"
#define SIMD_SSE 0x1
#define SIMD_SSE2 0x2
#define SIMD_SSE3 0x4
#define SIMD_SSSE3 0x8
#define SIMD_SSE4_1 0x10
#define SIMD_SSE4_2 0x20
#define SIMD_AVX 0x40
#define SIMD_AVX2 0x80
#define SIMD_AVX512F 0x100
#define SIMD_SSE 0x1
#define SIMD_SSE2 0x2
#define SIMD_SSE3 0x4
#define SIMD_SSSE3 0x8
#define SIMD_SSE4_1 0x10
#define SIMD_SSE4_2 0x20
#define SIMD_AVX 0x40
#define SIMD_AVX2 0x80
#define SIMD_AVX512F 0x100
#define SIMD_AVX512BW 0x200
#ifndef _MSC_VER
// adapted from https://github.com/01org/linux-sgx/blob/master/common/inc/internal/linux/cpuid_gnu.h
@@ -48,6 +49,7 @@ static int x86_simd(void)
__cpuidex(cpuid, 7, 0);
if (cpuid[1]>>5 &1) flag |= SIMD_AVX2;
if (cpuid[1]>>16&1) flag |= SIMD_AVX512F;
if (cpuid[1]>>30&1) flag |= SIMD_AVX512BW;
}
return flag;
}
@@ -73,8 +75,15 @@ void ksw_extd2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uin
int8_t q, int8_t e, int8_t q2, int8_t e2, int w, int zdrop, int end_bonus, int flag, ksw_extz_t *ez);
extern void ksw_extd2_avx2(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_t m, const int8_t *mat,
int8_t q, int8_t e, int8_t q2, int8_t e2, int w, int zdrop, int end_bonus, int flag, ksw_extz_t *ez);
extern void ksw_extd2_avx512(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_t m, const int8_t *mat,
int8_t q, int8_t e, int8_t q2, int8_t e2, int w, int zdrop, int end_bonus, int flag, ksw_extz_t *ez);
if (ksw_simd < 0) ksw_simd = x86_simd();
#ifdef __AVX2__
#if defined(__AVX512BW__)
if (ksw_simd & SIMD_AVX512BW)
ksw_extd2_avx512(km, qlen, query, tlen, target, m, mat, q, e, q2, e2, w, zdrop, end_bonus, flag, ez);
else
#endif
#if defined(__AVX2__)
if (ksw_simd & SIMD_AVX2)
ksw_extd2_avx2(km, qlen, query, tlen, target, m, mat, q, e, q2, e2, w, zdrop, end_bonus, flag, ez);
else