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Release minimap2-2.14 (r883)

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Heng Li
2018-11-06 00:03:16 -05:00
parent 5e55e397e9
commit 59f23f7579
8 changed files with 24 additions and 15 deletions
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misc/paftools.js
+6 -1
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@@ -1,6 +1,6 @@
#!/usr/bin/env k8
var paftools_version = '2.13-r872-dirty';
var paftools_version = '2.14-r883';
/*****************************
***** Library functions *****
@@ -781,6 +781,10 @@ function paf_asmgene(args)
var n_fn = args.length - getopt.ind;
if (n_fn < 2) {
print("Usage: paftools.js asmgene [options] <ref-splice.paf> <asm-splice.paf> [...]");
print("Options:");
print(" -i FLOAT min identity [" + opt.min_iden + "]");
print(" -c FLOAT min coverage [" + opt.min_cov + "]");
print(" -e print fragmented/missing genes");
exit(1);
}
@@ -2339,6 +2343,7 @@ function main(args)
print("");
print(" stat collect basic mapping information in PAF/SAM");
print(" asmstat collect basic assembly information");
print(" asmgene evaluate gene completeness (EXPERIMENTAL)");
print(" liftover simplistic liftOver");
print(" call call variants from asm-to-ref alignment with the cs tag");
print(" bedcov compute the number of bases covered");