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r288: changed max intron length to 200k

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Heng Li
2017-08-12 12:39:21 -04:00
parent d240318741
commit 5a74088b74
2 changed files with 4 additions and 4 deletions
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minimap2.1
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@@ -163,7 +163,7 @@ secondary alignments [5]. This option has no effect when
is applied.
.TP
.BI -G \ NUM
Maximal intron length in the splice mode. This option also changes the
Maximal intron length in the splice mode [200k]. This option also changes the
bandwidth to
.IR NUM .
Increasing this option slows down spliced alignment.
@@ -302,7 +302,7 @@ is that this preset is not using HPC minimizers.
.B splice
Long-read spliced alignment
.RB ( -k15
.B -w5 --splice -g2000 -G100k -A1 -B2 -O2,32 -E1,0
.B -w5 --splice -g2000 -G200k -A1 -B2 -O2,32 -E1,0
.BR -z200 ).
As of now, minimap2 only finds approximate exon boundaries. The true boundaries
are usually within 10bp around the reported positions. In the splice mode,