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r822: added option --no-end-flt

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Heng Li
2018-08-05 19:42:12 -04:00
parent b32296e18f
commit 5ab6538757
4 changed files with 14 additions and 6 deletions
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main.c
+3 -1
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@@ -10,7 +10,7 @@
#include "getopt.h"
#endif
#define MM_VERSION "2.11-r821-dirty"
#define MM_VERSION "2.11-r822-dirty"
#ifdef __linux__
#include <sys/resource.h>
@@ -62,6 +62,7 @@ static struct option long_options[] = {
{ "eqx", no_argument, 0, 0 }, // 32
{ "paf-no-hit", no_argument, 0, 0 }, // 33
{ "split-prefix", required_argument, 0, 0 }, // 34
{ "no-end-flt", no_argument, 0, 0 }, // 35
{ "help", no_argument, 0, 'h' },
{ "max-intron-len", required_argument, 0, 'G' },
{ "version", no_argument, 0, 'V' },
@@ -183,6 +184,7 @@ int main(int argc, char *argv[])
else if (c == 0 && long_idx ==32) opt.flag |= MM_F_EQX; // --eqx
else if (c == 0 && long_idx ==33) opt.flag |= MM_F_PAF_NO_HIT; // --paf-no-hit
else if (c == 0 && long_idx ==34) opt.split_prefix = optarg; // --split-prefix
else if (c == 0 && long_idx ==35) opt.flag |= MM_F_NO_END_FLT; // --no-end-flt
else if (c == 0 && long_idx == 14) { // --frag
yes_or_no(&opt, MM_F_FRAG_MODE, long_idx, optarg, 1);
} else if (c == 0 && long_idx == 15) { // --secondary