r822: added option --no-end-flt

2026-10-06 20:08:12 +08:00 · 2018-08-05 19:42:12 -04:00
parent b32296e18f
commit 5ab6538757
4 changed files with 14 additions and 6 deletions
@@ -360,6 +360,10 @@ the length of the terminal gap in the chain. This option is only effective
 with
 .BR --splice .
 It helps to avoid tiny terminal exons. [6]
+.TP
+.B --no-end-flt
+Don't filter seeds towards the ends of chains before performing base-level
+alignment.
 .SS Input/output options
 .TP 10
 .B -a