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r191: warning if CLI index opt diff from prebuilt

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Also added index testing API (moved from main.c to index.c)
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Heng Li
2017-07-19 10:25:11 -04:00
parent 4aff301ef4
commit 5c4d040b13
3 changed files with 35 additions and 29 deletions
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minimap.h
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@@ -122,6 +122,7 @@ const uint64_t *mm_idx_get(const mm_idx_t *mi, uint64_t minier, int *n);
int mm_idx_getseq(const mm_idx_t *mi, uint32_t rid, uint32_t st, uint32_t en, uint8_t *seq);
mm_idx_t *mm_idx_build(const char *fn, int w, int k, int is_hpc, int n_threads);
int mm_idx_is_idx(const char *fn);
// minimizer index I/O
void mm_idx_dump(FILE *fp, const mm_idx_t *mi);