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r753: change bandwidth in ava-ont to 2000bp

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Heng Li
2018-03-23 10:15:23 -04:00
parent 08bd2123b6
commit 5ef9580b17
3 changed files with 4 additions and 3 deletions
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main.c
+2 -2
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@@ -10,7 +10,7 @@
#include "getopt.h"
#endif
#define MM_VERSION "2.9-r752-dirty"
#define MM_VERSION "2.9-r753-dirty"
#ifdef __linux__
#include <sys/resource.h>
@@ -286,7 +286,7 @@ int main(int argc, char *argv[])
fprintf(fp_help, " asm5: -k19 -w19 -A1 -B19 -O39,81 -E3,1 -s200 -z200 (asm to ref mapping; break at 5%% div.)\n");
fprintf(fp_help, " asm10: -k19 -w19 -A1 -B9 -O16,41 -E2,1 -s200 -z200 (asm to ref mapping; break at 10%% div.)\n");
fprintf(fp_help, " ava-pb: -Hk19 -Xw5 -m100 -g10000 --max-chain-skip 25 (PacBio read overlap)\n");
fprintf(fp_help, " ava-ont: -k15 -Xw5 -m100 -g10000 --max-chain-skip 25 (ONT read overlap)\n");
fprintf(fp_help, " ava-ont: -k15 -Xw5 -m100 -g10000 -r2000 --max-chain-skip 25 (ONT read overlap)\n");
fprintf(fp_help, " splice: long-read spliced alignment (see minimap2.1 for details)\n");
fprintf(fp_help, " sr: short single-end reads without splicing (see minimap2.1 for details)\n");
fprintf(fp_help, "\nSee `man ./minimap2.1' for detailed description of command-line options.\n");