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added spliced alignment example

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Heng Li
2017-08-25 14:11:54 +08:00
parent bf8246f872
commit 5f96d851a8
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README.md
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@@ -10,6 +10,8 @@ cd minimap2 && make
./minimap2 -ax map10k MT-human.mmi test/MT-orang.fa > test.sam ./minimap2 -ax map10k MT-human.mmi test/MT-orang.fa > test.sam
# long-read overlap (no test data) # long-read overlap (no test data)
./minimap2 -x ava-pb your-reads.fa your-reads.fa > overlaps.paf ./minimap2 -x ava-pb your-reads.fa your-reads.fa > overlaps.paf
# spliced alignment (no test data)
./minimap2 -ax splice ref.fa rna-seq-reads.fa > spliced.sam
# man page # man page
man ./minimap2.1 man ./minimap2.1
``` ```